And I've already hit a problem. Or something hilarious.
I encountered a Mantis colony with PDS guns, so I thought "Crap, better deal with the ship quickly."
However I was out of range of the guns already so I thought "Cool, take it down quickly and those guns won't be a problem."
As soon as I unpaused the game though, the ship immediately started retreating "after taking heavy damage." Ummm... what? I hadn't even fired at you yet! I let him go though, because I was in no shape for dealing with boarders. Did I mention how much I hate boarders in CE Infinite? Every other beacon is a boarding event and I don't have any good crew. Just Engies!

Also, I hate radiation weapons. It seems every other ship as well has an O2 drainer. Did I say anything before about not minding radiation weapons? Well now I do! Arrghh!