I'll go ahead and just post a public link, in case anyone else would care to take a look at it as well.
https://dl.dropboxusercontent.com/u/58693565/Randtrel.ftlSince my last post I discovered that I was using an outdated version of Slipstream Mod Manager, but updating to the new version didn't change anything. Is there anything else I could have missed that I might not be aware of?
EDIT: This mess looks scary. Is this normal behavior?
Code: Select all
16:15:35.608 [AWT-EventQueue-0] DEBUG net.vhati.modmanager.FTLModManager - Slipstream Mod Manager v1.6
16:15:35.638 [AWT-EventQueue-0] DEBUG net.vhati.modmanager.FTLModManager - Windows 7 6.1
16:15:35.638 [AWT-EventQueue-0] DEBUG net.vhati.modmanager.FTLModManager - Java HotSpot(TM) Client VM, 1.8.0_25, x86
16:15:35.838 [AWT-EventQueue-0] INFO net.vhati.modmanager.FTLModManager - Using FTL dats path from config: C:\Program Files (x86)\FTL\resources
16:15:44.183 [Thread-5] INFO net.vhati.modmanager.core.ModsScanThread - Background hashing finished.
16:15:44.183 [Thread-5] INFO net.vhati.modmanager.core.ModsScanThread - Background metadata caching finished.
16:16:28.076 [AWT-EventQueue-0] INFO net.vhati.modmanager.ui.ManagerFrame -
16:16:28.076 [AWT-EventQueue-0] INFO net.vhati.modmanager.ui.ManagerFrame - Patching...
16:16:28.076 [AWT-EventQueue-0] INFO net.vhati.modmanager.ui.ManagerFrame -
16:16:28.086 [Thread-6] INFO net.vhati.modmanager.core.ModPatchThread - Restoring vanilla "data.dat"...
16:16:28.306 [Thread-6] INFO net.vhati.modmanager.core.ModPatchThread - Restoring vanilla "resource.dat"...
16:16:36.411 [Thread-6] INFO net.vhati.modmanager.core.ModPatchThread -
16:16:36.411 [Thread-6] INFO net.vhati.modmanager.core.ModPatchThread - Installing mod: CE Resource Pack 1.269.ftl
16:16:40.244 [Thread-6] INFO net.vhati.modmanager.core.ModPatchThread -
16:16:40.254 [Thread-6] INFO net.vhati.modmanager.core.ModPatchThread - Installing mod: FTL Captains Edition 1.269.ftl
16:16:40.364 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/tb_circle_gunboat.xml~
16:16:40.464 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/tb_rock_assault.xml~
16:16:40.474 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/tb_rock_barge.xml~
16:16:40.484 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/ce_mantis_spotter.xml~
16:16:40.484 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/ce_rock_spotter.xml~
16:16:40.484 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/ce_rock_defender.xml~
16:16:40.484 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/misc.xml.append~
16:16:40.484 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/circle_cruiser.xml~
16:16:40.484 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/circle_cruiser_2.xml~
16:16:40.484 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/crystal_cruiser.xml~
16:16:40.484 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/crystal_cruiser_2.xml~
16:16:40.484 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/energy_cruiser.xml~
16:16:40.494 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/tb_rock_fireship.xml~
16:16:40.504 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/ce_mantis_minelayer_hazard.xml~
16:16:40.504 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/ce_mantis_minelayer.xml~
16:16:40.524 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/bs_auto_satellite.xml~
16:16:40.544 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/tb_circle_hunter.xml~
16:16:40.554 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/tb_mantis_barge.xml~
16:16:40.554 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/tb_circle_barge.xml~
16:16:40.604 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/bs_auto_scrambler.xml~
16:16:40.614 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/ce_husk_1.xml~
16:16:40.644 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/ce_husk_1.txt~
16:16:40.644 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/kestral_2.txt~
16:16:40.644 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/kestral_3.txt~
16:16:40.644 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/stealth_3.txt~
16:16:40.654 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/stealth_3.xml~
16:16:40.654 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/ce_rock_ironclad.xml~
16:16:40.654 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/kestral.xml~
16:16:40.654 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/mantis_cruiser.xml~
16:16:40.664 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/mantis_cruiser_3.xml~
16:16:40.664 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/kestral_2.xml~
16:16:40.674 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/mantis_cruiser_2.xml~
16:16:40.674 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/kestral_3.xml~
16:16:40.730 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/tb_mantis_gunboat.xml~
16:16:40.732 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/anaerobic_cruiser.xml~
16:16:40.733 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/ce_rock_ramship.txt~
16:16:40.734 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/ce_rock_cruiser.txt~
16:16:40.736 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/tb_crystal_barge.txt~
16:16:40.736 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/ce_civ_spotter.txt~
16:16:40.746 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/ce_fed_freighter.txt~
16:16:40.776 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/ce_civ_infiltrator.xml~
16:16:40.786 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/.dropbox
16:16:40.796 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/bs_auto_drone.xml~
16:16:40.816 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/bs_ai_outpost.xml~
16:16:40.816 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/bs_ai_tech_station.xml~
16:16:40.816 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/tb_anaerobic_interceptor.xml~
16:16:40.826 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/tb_anaerobic_bomber.txt~
16:16:40.826 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/tb_anaerobic_bomber.xml~
16:16:40.826 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/jelly_cruiser.xml~
16:16:40.826 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/fed_cruiser_2.xml~
16:16:40.826 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/tb_rebel_fat_dlc.txt~
16:16:40.826 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/jelly_cruiser_2.xml~
16:16:40.826 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/tb_anaerobic_scout.xml~
16:16:40.836 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/tb_rock_fight_pirate.xml~
16:16:40.836 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/tb_rebel_long_pirate.xml~
16:16:40.836 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/tb_mantis_scout_pirate.xml~
16:16:40.846 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/tb_mantis_fighter_pirate.xml~
16:16:40.846 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/tb_mantis_bomber_pirate.xml~
16:16:40.846 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/tb_jelly_croissant_pirate.xml~
16:16:40.846 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/tb_jelly_button_pirate.xml~
16:16:40.846 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/tb_energy_fighter_pirate.xml~
16:16:40.846 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/tb_energy_bomber_pirate.xml~
16:16:40.846 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/bs_auto_controller.xml~
16:16:40.846 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/ce_energy_defender.xml~
16:16:40.846 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/tb_rock_fight_dlc.txt~
16:16:40.856 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/tb_energy_gunboat.xml~
16:16:40.856 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/bs_rock_checkpoint.txt~
16:16:40.856 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/bs_civ_trade.xml~
16:16:40.856 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/rock_cruiser.xml~
16:16:40.866 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/kestral.txt~
16:16:40.866 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/ce_auto_spotter.xml~
16:16:40.866 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/rock_cruiser_2.xml~
16:16:40.866 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/jelly_cruiser_3.xml~
16:16:40.876 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/bs_jelly_checkpoint.txt~
16:16:40.876 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/ce_ai_defender.xml~
16:16:40.876 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/ce_mantis_defender.xml~
16:16:40.876 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/ce_rebel_defender.xml~
16:16:40.876 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/ce_civ_spotter.xml~
16:16:40.886 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/ce_rock_cruiser.xml~
16:16:40.886 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/bs_energy_checkpoint.txt~
16:16:40.896 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/anaerobic_cruiser_2.xml~
16:16:40.896 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/rock_cruiser_3.xml~
16:16:40.896 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/mantis_cruiser_3.txt~
16:16:40.896 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/c_auto_cruiser.txt~
16:16:40.906 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/stealth.xml~
16:16:40.916 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/circle_cruiser_2.txt~
16:16:40.916 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/tb_jelly_truffle_pirate.xml~
16:16:40.926 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/tb_rebel_squat_pirate.xml~
16:16:40.936 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/tb_rock_scout_pirate.xml~
16:16:40.936 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/ce_husk_2.xml~
16:16:40.936 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/ce_husk_3.xml~
16:16:40.936 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/ce_husk_4.xml~
16:16:40.936 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/ce_rock_ironclad.txt~
16:16:40.936 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/fed_cruiser_3.xml~
16:16:41.046 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/events_slug.xml.append~
16:16:41.056 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/events_zoltan.xml.append~
16:16:41.066 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/ce_auto_constructor.xml~
16:16:41.066 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/ce_auto_miner.xml~
16:16:41.076 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/ce_auto_repair.xml~
16:16:41.076 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/c_auto_constructor.xml~
16:16:41.076 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/c_auto_freighter.xml~
16:16:41.076 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/c_auto_planet_miner.xml~
16:16:41.076 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/newEvents.xml.append~
16:16:41.076 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/events_nebula.xml.append~
16:16:41.326 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/events_ships.xml.append~
16:16:41.336 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/tb_rock_courier.xml~
16:16:41.336 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/tb_rock_envoy.xml~
16:16:41.336 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/events_rock.xml.append~
16:16:41.436 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/tb_anaerobic_broodship.txt~
16:16:41.436 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/tb_anaerobic_instiator.xml~
16:16:41.446 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/names.xml~
16:16:41.446 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/events_fuel.xml.append~
16:16:41.456 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/tb_mantis_troopship.xml~
16:16:41.466 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/c_rebel_ew_frigate.xml~
16:16:41.476 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/bs_jelly_checkpoint.xml~
16:16:41.476 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/c_auto_ew_cruiser.txt~
16:16:41.476 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/c_auto_cruiser.xml~
16:16:41.476 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/c_auto_ew_cruiser.xml~
16:16:41.476 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/tb_rebel_skinny_dlc.txt~
16:16:41.476 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/tb_jelly_button_dlc.txt~
16:16:41.486 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/tb_mantis_fighter_dlc.txt~
16:16:41.486 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/tb_fed_bomber_dlc.txt~
16:16:41.516 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/tb_jelly_barge.xml~
16:16:41.546 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/bs_auto_checkpoint.xml~
16:16:41.546 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/tb_anaerobic_broodship.xml~
16:16:41.546 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/tb_anaerobic_assault.xml~
16:16:41.546 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/bs_auto_construction.xml~
16:16:41.546 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/bs_auto_repair.xml~
16:16:41.556 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/c_rebel_ew_cruiser.txt~
16:16:41.706 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/ce_boss_3_fleet.txt~
16:16:41.876 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/events_crystal.xml.append~
16:16:41.876 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/ce_auto_cargo.xml~
16:16:41.876 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/events_rebel.xml.append~
16:16:42.996 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/circle_cruiser_3.xml~
16:16:43.376 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/dlcEventsOverwrite.xml.append~
16:16:43.576 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/events_imageList.xml.append~
16:16:43.596 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/c_pirate_cruiser_artillery.xml~
16:16:43.656 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/animations.xml.append~
16:16:43.656 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/blueprints.xml.append~
16:16:43.656 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/c_pirate_cruiser_ew.xml~
16:16:43.656 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/c_pirate_cruiser_stealth.xml~
16:16:44.076 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/dlcBlueprints.xml.append~
16:16:44.076 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/bs_circle_drone.xml~
16:16:44.136 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Appending xml as raw text: data/misc.xml
16:16:44.146 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/bosses.xml~
16:16:44.146 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/tb_rock_ambassador.xml~
16:16:44.146 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/events.xml.append~
16:16:44.176 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/dlcEvents_anaerobic.xml.append~
16:16:44.186 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/autoBlueprints.xml.append~
16:16:44.196 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/events_boss.xml.append~
16:16:44.336 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/ce_boss_3_fleet.xml~
16:16:44.336 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/dlcEvents.xml.append~
16:16:44.336 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/events_mantis.xml.append~
16:16:44.336 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/sounds.xml.append~
16:16:44.346 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/events_engi.xml.append~
16:16:44.346 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/sector_data.xml.append~
16:16:44.356 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/events_pirate.xml.append~
16:16:44.446 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/dlcBlueprintsOverwrite.xml.append~
16:16:44.446 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/energy_cruiser_3.xml~
16:16:44.566 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/stealth_2.xml~
16:16:44.576 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/tb_anaerobic_assault.txt~
16:16:44.576 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Skipping junk file: data/energy_cruiser_2.xml~
16:16:44.936 [Thread-6] INFO net.vhati.modmanager.core.ModPatchThread -
16:16:45.006 [Thread-6] INFO net.vhati.modmanager.core.ModPatchThread - Installing mod: Randtrel.ftl
16:16:45.006 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Clobbering earlier mods: data/anaerobic_cruiser.xml
16:16:45.336 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Clobbering earlier mods: data/circle_cruiser.xml
16:16:45.346 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Clobbering earlier mods: data/crystal_cruiser.xml
16:16:45.446 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Clobbering earlier mods: data/energy_cruiser.xml
16:16:45.446 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Clobbering earlier mods: data/fed_cruiser.xml
16:16:45.456 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Clobbering earlier mods: data/jelly_cruiser.xml
16:16:45.456 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Clobbering earlier mods: data/kestral.txt
16:16:45.456 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Clobbering earlier mods: data/kestral.xml
16:16:45.456 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Clobbering earlier mods: data/mantis_cruiser.xml
16:16:45.466 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Clobbering earlier mods: data/rock_cruiser.xml
16:16:45.486 [Thread-6] WARN net.vhati.modmanager.core.ModPatchThread - Clobbering earlier mods: data/stealth.xml
16:16:46.066 [Thread-6] INFO net.vhati.modmanager.core.ModPatchThread - Repacked "data.dat" (9776020 bytes affected)
16:16:47.407 [Thread-6] INFO net.vhati.modmanager.core.ModPatchThread - Repacked "resource.dat" (312990861 bytes affected)
EDIT 2: And suddenly it's working. I have no idea what I did differently. Disregard, I supposed. This is a fantastic mod, by the way.